JASPAR CORE

Total 1964 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0068.2 PAX4 Homo sapiens Paired box factors Paired plus homeo domain
MA0069.1 PAX6 Homo sapiens Paired box factors Paired plus homeo domain
MA0070.1 PBX1 Homo sapiens Homeo domain factors TALE-type homeo domain factors
MA0071.1 RORA Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA0072.1 RORA(var.2) Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA0073.1 RREB1 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0074.1 RXRA::VDR Homo sapiens Nuclear receptors with C4 zinc fingers::Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)::Thyroid hormone receptor-related factors (NR1)
MA0075.1 Prrx2 Mus musculus Homeo domain factors Paired-related HD factors
MA0075.2 Prrx2 Mus musculus Homeo domain factors Paired-related HD factors
MA0075.3 PRRX2 Homo sapiens Homeo domain factors Paired-related HD factors
Showing 10 profiles of page 13 from 197 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.


You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)

Relative profile score threshold %

Cluster selected models using STAMP tool.




You can use the Newick tree from results to visualize on PhyloTree

Create random matrix models based on selected models.


Create models with permuted columns from selected models.


Download the PFMs of the model(s) selected in four different formats.