Detailed information of matrix profile MA0562.1

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Profile summary
Name: PIF5
Matrix ID: MA0562.1
Class: Basic helix-loop-helix factors (bHLH)
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: ChIP-seq
Validation: 22536829
Uniprot ID: Q84LH8  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 30 0 286 0 0 0 0 208 ]
C [ 161 286 0 195 0 0 0 0 ]
G [ 95 0 0 0 286 0 286 78 ]
T [ 0 0 0 91 0 286 0 0 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0562.1 MA0562 1 PIF5 Arabidopsis thaliana
Basic helix-loop-helix factors (bHLH)
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0558.1

ChIP-seq Centrality
log(P-value): -1256.02

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0558.1

ChIP-seq Centrality
log(P-value): -1298.88

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: