Detailed information of matrix profile MA0594.2

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Profile summary
Name: HOXA9
Matrix ID: MA0594.2
Class: Homeo domain factors
Family: HOX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 12923056
Uniprot ID: P31269  
Source: 28473536
Comment:

Sequence logo

Frequency matrix

         
A [ 651 277 77 627 0 1644 1644 1644 370 350 ]
C [ 381 534 1644 17 47 123 86 874 485 449 ]
G [ 993 145 16 1644 0 74 23 215 336 498 ]
T [ 33 1644 71 0 1644 1262 177 875 453 347 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0594.1 MA0594 1 Hoxa9 Mus musculus
HOX-related factors Homeo domain factors
MA0594.2 MA0594 2 HOXA9 Homo sapiens
HOX-related factors Homeo domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0179.2

ChIP-seq Centrality
log(P-value): -984.036

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0179.2

ChIP-seq Centrality
log(P-value): -784.87

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: