Detailed information of matrix profile MA0653.1

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Profile summary
Name: IRF9
Matrix ID: MA0653.1
Class: Tryptophan cluster factors
Family: Interferon-regulatory factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 21731497
Uniprot ID: Q00978  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 2338 2 3 21 0 1 831 9 1 3 0 5 118 1076 110 ]
C [ 7 239 0 0 0 3467 0 197 0 0 1 3467 33 204 43 ]
G [ 1129 3467 0 1 2 0 3467 3467 2 0 5 3 3467 498 52 ]
T [ 99 4 3467 3467 3467 2 16 43 3467 3467 3467 43 49 2392 3467 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0653.1 MA0653 1 IRF9 Homo sapiens
Interferon-regulatory factors Tryptophan cluster factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: