Detailed information of matrix profile MA0686.1

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Profile summary
Name: SPDEF
Matrix ID: MA0686.1
Class: Tryptophan cluster factors
Family: Ets-related factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 23449978
Uniprot ID: O95238  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 810 4628 66 4628 2 8 0 1 0 77 912 ]
C [ 1339 28 4628 11 6 4628 4628 1 92 536 176 ]
G [ 568 1345 601 69 0 0 2 4628 4628 2737 101 ]
T [ 1911 58 1566 532 4628 6 2 237 52 1890 4628 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0686.1 MA0686 1 SPDEF Homo sapiens
Ets-related factors Tryptophan cluster factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0592.1

ChIP-seq Centrality
log(P-value): -381.414

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0592.1

ChIP-seq Centrality
log(P-value): -413.401

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: