Detailed information of matrix profile MA0855.1

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Profile summary
Name: RXRB
Matrix ID: MA0855.1
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 15019979
Uniprot ID: P28702  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 3 184 4431 312 7 0 31 1 350 4481 492 10 3 224 ]
C [ 299 102 19 3745 3867 221 119 12 112 11 3642 3955 3737 3156 ]
G [ 13 7053 2 0 0 1 5 0 7053 2 0 1 8 342 ]
T [ 5738 16 1 2 1 5729 5820 5823 37 0 1 14 1659 1430 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0855.1 MA0855 1 RXRB Homo sapiens
RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0579.1

ChIP-seq Centrality
log(P-value): -3211.34

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0579.1

ChIP-seq Centrality
log(P-value): -3249.87

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: