Detailed information of matrix profile MA0870.1

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Profile summary
Name: Sox1
Matrix ID: MA0870.1
Class: High-mobility group (HMG) domain factors
Family: SOX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: HT-SELEX
Validation: 12920151
Uniprot ID: P53783  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 1499 2316 0 2316 2316 0 33 502 634 2316 0 7 0 85 195 ]
C [ 265 58 2316 0 244 0 51 525 359 0 0 0 0 36 356 ]
G [ 329 260 0 14 0 0 2316 508 5 0 325 12 2316 51 396 ]
T [ 222 79 0 0 0 2316 4 782 1682 13 2316 2316 0 2316 1369 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0870.1 MA0870 1 Sox1 Mus musculus
SOX-related factors High-mobility group (HMG) domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

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