Detailed information of matrix profile MA0909.2

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Profile summary
Name: HOXD13
Matrix ID: MA0909.2
Class: Homeo domain factors
Family: HOX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 18585359
Uniprot ID: P35453  
Source: 28473536
Comment:

Sequence logo

Frequency matrix

         
A [ 45 65 0 368 368 6 368 368 368 368 60 ]
C [ 182 368 368 140 0 0 0 0 73 249 303 ]
G [ 129 329 0 0 5 0 0 12 0 13 3 ]
T [ 12 0 0 0 0 368 0 0 0 0 2 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0909.1 MA0909 1 HOXD13 Homo sapiens
HOX-related factors Homeo domain factors
MA0909.2 MA0909 2 HOXD13 Homo sapiens
HOX-related factors Homeo domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0506.1

ChIP-seq Centrality
log(P-value): -3673.47

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0506.1

ChIP-seq Centrality
log(P-value): -3307.66

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: