Detailed information of matrix profile MA1052.1

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Profile summary
Name: RAP2-6
Matrix ID: MA1052.1
Class: AP2/ERF domain
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: PBM
Validation: 15319480
Uniprot ID: Q7G1L2  
Source: 24477691
Comment:

Sequence logo

Frequency matrix

         
A [ 10 20 3 1 1 2 8 14 ]
C [ 2 14 990 2 104 989 7 681 ]
G [ 921 947 3 985 894 2 958 271 ]
T [ 66 20 4 12 2 7 27 34 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1052.1 MA1052 1 RAP2-6 Arabidopsis thaliana
AP2/ERF domain
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0570.1

ChIP-seq Centrality
log(P-value): -273.629

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0570.1

ChIP-seq Centrality
log(P-value): -320.586

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: