Detailed information of matrix profile MA1100.2

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Profile summary
Name: ASCL1
Matrix ID: MA1100.2
Class: Basic helix-loop-helix factors (bHLH)
Family: MyoD / ASC-related factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 20382226
Uniprot ID: P50553  
Source: 28473536
Comment:

Sequence logo

Frequency matrix

         
A [ 1194 1349 29 4413 20 625 218 14 354 726 ]
C [ 889 814 4413 121 1320 4413 60 0 3079 1495 ]
G [ 1487 3065 0 24 4413 1288 157 4413 521 926 ]
T [ 843 177 52 118 729 107 4413 0 1334 1267 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1100.1 MA1100 1 ASCL1 Homo sapiens
MyoD / ASC-related factors Basic helix-loop-helix factors (bHLH)
MA1100.2 MA1100 2 ASCL1 Homo sapiens
MyoD / ASC-related factors Basic helix-loop-helix factors (bHLH)
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0131.2

ChIP-seq Centrality
log(P-value): -40944.4

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0131.2

ChIP-seq Centrality
log(P-value): -40958.0

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: