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2020
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Detailed information of matrix profile
MA1688.1
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Matrix > MA1688.1
Profile summary
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Name:
ARF16
Matrix ID:
MA1688.1
Class:
B3 domain
Family:
Collection:
CORE
Taxon:
Plants
Species:
Zea mays
Data Type:
DAP-seq
Validation:
24485461
Uniprot ID:
K7URZ7
Source:
30375394
Comment:
The motif matches the TGTC core motif associated to ARF TFs.
Sequence logo
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Frequency matrix
JASPAR
TRANSFAC
MEME
RAW PFM
Reverse comp.
A [
2470
3249
980
5651
6555
302
7230
357
7198
6756
687
5396
2328
2681
]
C [
1473
1643
5307
950
574
374
142
6981
220
261
565
697
2087
1648
]
G [
2135
1614
965
578
511
6749
359
283
214
338
6061
942
1543
1781
]
T [
1754
1326
580
653
192
407
101
211
200
477
519
797
1874
1722
]
Binding sites information
HTML file
FASTA file
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External links
Version information
ChIP-seq centrality
First order TFFM
Detailed TFFM
Wordclouds
More details
Matrix ID
Base ID
Version
Name
Species
Family
Class
Sequence logo
MA1688.1
MA1688
1
ARF16
Zea mays
B3 domain
JASPAR
TRANSFAC
MEME
RAW PFM
log(P-value) = -286.093
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Description:
Alias:
Symbol:
Consensus:
Included Models:
GC Content: