MEME version 4 ALPHABET= ACGT strands: + - Background letter frequencies A 0.25 C 0.25 G 0.25 T 0.25 MOTIF MA0464.1 Bhlhe40 letter-probability matrix: alength= 4 w= 11 nsites= 15804 E= 0 0.102885 0.434574 0.399329 0.063212 0.308087 0.033156 0.199064 0.459694 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.917046 0.000000 0.082954 0.181916 0.070046 0.748038 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.244179 0.754176 0.001645 0.000000 0.419451 0.269236 0.021830 0.289484 0.128322 0.398190 0.232916 0.240572 URL http://jaspar.genereg.net/matrix/MA0464.1 MOTIF PH0009.1 Bsx letter-probability matrix: alength= 4 w= 16 nsites= 100 E= 0 0.300000 0.360000 0.280000 0.060000 0.415842 0.267327 0.247525 0.069307 0.277228 0.069307 0.495050 0.158416 0.207921 0.128713 0.445545 0.217822 0.010000 0.450000 0.000000 0.540000 0.929293 0.050505 0.020202 0.000000 0.989899 0.010101 0.000000 0.000000 0.000000 0.000000 0.010101 0.989899 0.000000 0.020202 0.050505 0.929293 0.540000 0.000000 0.450000 0.010000 0.200000 0.320000 0.280000 0.200000 0.158416 0.495050 0.069307 0.277228 0.140000 0.190000 0.180000 0.490000 0.210000 0.370000 0.310000 0.110000 0.750000 0.050000 0.130000 0.070000 0.290000 0.120000 0.320000 0.270000 URL http://jaspar.genereg.net/matrix/PH0009.1 MOTIF MA0170.1 C15 letter-probability matrix: alength= 4 w= 7 nsites= 19 E= 0 0.052632 0.052632 0.000000 0.894737 0.000000 0.000000 0.000000 1.000000 0.894737 0.000000 0.000000 0.105263 1.000000 0.000000 0.000000 0.000000 0.315789 0.105263 0.000000 0.578947 0.000000 0.157895 0.315789 0.526316 0.526316 0.000000 0.473684 0.000000 URL http://jaspar.genereg.net/matrix/MA0170.1 MOTIF PF0002.1 CACGTG letter-probability matrix: alength= 4 w= 6 nsites= 5224 E= 0 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 URL http://jaspar.genereg.net/matrix/PF0002.1 MOTIF MA0279.1 CAD1 letter-probability matrix: alength= 4 w= 10 nsites= 2254 E= 0 0.912156 0.044366 0.043478 0.000000 0.044252 0.000000 0.000000 0.955748 0.000000 0.000000 0.000000 1.000000 0.874942 0.045391 0.000000 0.079667 0.264151 0.093462 0.642387 0.000000 0.000000 0.000000 0.000000 1.000000 0.904320 0.095680 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.639566 0.360434 0.000000 0.955606 0.000000 0.044394 URL http://jaspar.genereg.net/matrix/MA0279.1 MOTIF PF0015.1 CAGCTG letter-probability matrix: alength= 4 w= 6 nsites= 6436 E= 0 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 URL http://jaspar.genereg.net/matrix/PF0015.1 MOTIF PF0076.1 CAGGTA letter-probability matrix: alength= 4 w= 6 nsites= 2472 E= 0 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 URL http://jaspar.genereg.net/matrix/PF0076.1 MOTIF PF0012.1 CAGGTG letter-probability matrix: alength= 4 w= 6 nsites= 12312 E= 0 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 URL http://jaspar.genereg.net/matrix/PF0012.1 MOTIF PF0143.1 CAGNWMCNNNGAC letter-probability matrix: alength= 4 w= 13 nsites= 280 E= 0 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.089286 0.775000 0.092857 0.042857 0.942857 0.000000 0.000000 0.057143 0.071429 0.928571 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.482143 0.110714 0.185714 0.221429 0.260714 0.339286 0.160714 0.239286 0.114286 0.003571 0.757143 0.125000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 URL http://jaspar.genereg.net/matrix/PF0143.1 MOTIF PF0160.1 CAGNYGKNAAA letter-probability matrix: alength= 4 w= 11 nsites= 228 E= 0 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.228070 0.557018 0.131579 0.083333 0.000000 0.153509 0.000000 0.846491 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.535088 0.464912 0.162281 0.394737 0.333333 0.109649 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 URL http://jaspar.genereg.net/matrix/PF0160.1