Detailed information of matrix profile MA0153.2

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Profile summary
Name: HNF1B
Matrix ID: MA0153.2
Class: Homeo domain factors
Family: POU domain factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 17916232
Uniprot ID: P35680  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 13724 406 3119 30839 30839 1047 5474 30839 612 49 30839 30839 1628 ]
C [ 725 1980 5271 1 1589 600 9626 66 140 398 778 1434 30839 ]
G [ 17114 1472 794 665 416 73 9236 809 1163 13 3466 2552 1030 ]
T [ 1790 30839 30839 80 1323 30839 6502 1944 30839 30839 5730 541 1528 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0153.1 MA0153 1 HNF1B Homo sapiens
Mus musculus
POU domain factors Homeo domain factors
MA0153.2 MA0153 2 HNF1B Homo sapiens
POU domain factors Homeo domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0178.1

ChIP-seq Centrality
log(P-value): -2100.37

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0178.1

ChIP-seq Centrality
log(P-value): -2126.74

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: