Detailed information of matrix profile MA0485.1

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Profile summary
Name: Hoxc9
Matrix ID: MA0485.1
Class: Homeo domain factors
Family: HOX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: ChIP-seq
Validation: 9079637
Uniprot ID: P09633  
Source: PAZAR
Comment:

Sequence logo

Frequency matrix

         
A [ 255 240 117 867 0 4 21 876 16 192 152 66 139 ]
C [ 160 6 5 0 0 0 35 0 205 1 40 536 401 ]
G [ 329 72 715 0 6 0 84 9 3 468 605 171 110 ]
T [ 141 567 48 18 879 881 745 0 661 224 88 112 235 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0485.1 MA0485 1 Hoxc9 Mus musculus
HOX-related factors Homeo domain factors
MA0485.2 MA0485 2 HOXC9 Homo sapiens
HOX-related factors Homeo domain factors
     

log(P-value) = -685

TFFM details

TFFM ID: TFFM0047.1

ChIP-seq Centrality
log(P-value): -5357.75

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0047.1

ChIP-seq Centrality
log(P-value): -5255.11

TFFM detailed summary logos

Description: homeobox C9

Alias: -

Symbol: HOXC9

Consensus:

Included Models:

GC Content: