matrix-clustering JASPAR_2020

matrix-clustering  -v 2 -matrix JASPAR_2020_fungi data/motifs/JASPAR2020_CORE_fungi.tf tf -hclust_method average -calc sum -title 'JASPAR 2020 fungi' -metric_build_tree Ncor -lth w 5 -lth cor 0.6 -lth Ncor 0.4 -label_in_tree name -return json,heatmap -quick -o results/JASPAR_2020_matrix_clustering/fungi/interactive_trees/JASPAR_2020_matrix_clustering_fungi

Results Summary

Nb Input motifs

Nb Input collections

Nb Clusters Found

Download
Root motifs

Complete results [zip]

Parameters used

Linkage method ?

Similarity metric ?

Thresholds to partition the tree?

183

Download

Download

average

Ncor

Ncor = 0.4
cor = 0.6

Individual Motif View

Motif id	Motif name	Cluster	Collection	Width	IC	Number of sites	Consensus	Consensus (Rev)
JASPAR_2020_fungi_m139_MA0396_1	STP3	cluster_3	JASPAR_2020_fungi	11	7.74	101	-rcTAGCGca-	-TGCGCTAGY-
JASPAR_2020_fungi_m62_MA0323_1	IXR1	cluster_34	JASPAR_2020_fungi	16	14.29	301	AArCCGGrAGCGGkG-	-CMCCGCTYCCGGYTT
JASPAR_2020_fungi_m94_MA0349_1	OPI1	cluster_28	JASPAR_2020_fungi	8	7.16	279	-cGAACCv	BGGTTCG-
JASPAR_2020_fungi_m167_MA0423_1	YER130C	cluster_1	JASPAR_2020_fungi	10	7.90	100	-mCCCCTwTh	DAWAGGGGK-
JASPAR_2020_fungi_m55_MA0317_1	HCM1	cluster_11	JASPAR_2020_fungi	13	6.12	101	----rwmAACAa-	-TTGTTKWY----
JASPAR_2020_fungi_m140_MA0397_1	STP4	cluster_3	JASPAR_2020_fungi	11	8.10	101	-gmTAGCGCa-	-TGCGCTAKC-
JASPAR_2020_fungi_m103_MA0360_1	RDR1	cluster_7	JASPAR_2020_fungi	9	8.29	101	-tGCGGAAm	KTTCCGCA-
JASPAR_2020_fungi_m10_MA0274_1	ARR1	cluster_26	JASPAR_2020_fungi	10	6.23	234	AyyTRAAT--	--ATTYARRT
JASPAR_2020_fungi_m144_MA0401_1	SWI4	cluster_10	JASPAR_2020_fungi	9	8.27	101	-TTTCGCGT	aCGCGAAa-
JASPAR_2020_fungi_m46_MA0307_1	GLN3	cluster_14	JASPAR_2020_fungi	9	5.45	100	--GATWr--	--YWATC--
JASPAR_2020_fungi_m47_MA0308_1	GSM1	cluster_20	JASPAR_2020_fungi	21	9.27	999	wtyaarwAwCTCCGGArtwkw	WMWAYTCCGGAGWTWYTTRAW
JASPAR_2020_fungi_m37_MA0298_1	FZF1	cluster_14	JASPAR_2020_fungi	9	8.32	1	-TGATAG--	--CTATCA-
JASPAR_2020_fungi_m151_MA0407_1	THI2	cluster_65	JASPAR_2020_fungi	15	14.99	1348	GGmAACyswWAGArC	GYTCTWWSRGTTKCC
JASPAR_2020_fungi_m44_MA0305_1	GCR2	cluster_16	JASPAR_2020_fungi	8	7.04	279	DGGAAGC-	-gCTTCCh
JASPAR_2020_fungi_m109_MA0366_1	RGM1	cluster_1	JASPAR_2020_fungi	10	6.23	100	--CCCCT---	---AGGGG--
JASPAR_2020_fungi_m138_MA0395_1	STP2	cluster_61	JASPAR_2020_fungi	20	7.98	999	yrawygGyGCCGyrysackh	DMGTSRYRCGGCRCCRWTYR
JASPAR_2020_fungi_m38_MA0299_1	GAL4	cluster_63	JASPAR_2020_fungi	15	7.99	3221	CGGrsvAsagtrytC	GARYACTSTBSYCCG
JASPAR_2020_fungi_m79_MA0340_1	MOT3	cluster_36	JASPAR_2020_fungi	7	6.53	203	hAGGyA-	-TRCCTD
JASPAR_2020_fungi_m80_MA1433_1	msn-1	cluster_1	JASPAR_2020_fungi	10	6.60	999	-cCCCCTkw-	-WMAGGGGG-
JASPAR_2020_fungi_m174_MA0432_1	YNR063W	cluster_8	JASPAR_2020_fungi	12	8.28	102	-tCGGAGAw---	---WTCTCCGA-
JASPAR_2020_fungi_m49_MA0310_1	HAC1	cluster_4	JASPAR_2020_fungi	9	8.04	101	-YACGTGKC	gMCACGTr-
JASPAR_2020_fungi_m161_MA0414_1	XBP1	cluster_27	JASPAR_2020_fungi	7	6.19	101	yTCGArr	YYTCGAR
JASPAR_2020_fungi_m154_MA0409_1	TYE7	cluster_4	JASPAR_2020_fungi	9	8.18	102	-CACGTGA-	-TCACGTG-
JASPAR_2020_fungi_m180_MA0438_1	YRM1	cluster_8	JASPAR_2020_fungi	12	7.38	100	-ATTTCCGT---	---aCGGAaAT-
JASPAR_2020_fungi_m119_MA1431_1	rst2	cluster_1	JASPAR_2020_fungi	10	6.26	999	waCCCCgCwy	RWGCGGGGTW
JASPAR_2020_fungi_m115_MA0372_1	RPH1	cluster_1	JASPAR_2020_fungi	10	8.15	101	-aCCCCTwA-	-TWAGGGGT-
JASPAR_2020_fungi_m89_MA1435_1	nit-4	cluster_6	JASPAR_2020_fungi	10	8.74	999	CYCCGCGGAR	yTCCGCGGrg
JASPAR_2020_fungi_m81_MA0341_1	MSN2	cluster_1	JASPAR_2020_fungi	10	6.08	100	--CCCCY---	---rGGGG--
JASPAR_2020_fungi_m105_MA0362_1	RDS2	cluster_27	JASPAR_2020_fungi	7	7.06	101	mTCGGGG	CCCCGAK
JASPAR_2020_fungi_m53_MA0314_1	HAP3	cluster_39	JASPAR_2020_fungi	20	10.76	3145	-----tcTsATTGGyyvrra	TYYBRRCCAATSAGA-----
JASPAR_2020_fungi_m13_MA0277_1	AZF1	cluster_32	JASPAR_2020_fungi	9	7.99	102	aAAARGAAa	TTTCYTTTT
JASPAR_2020_fungi_m78_MA0379_1	MOT2	cluster_55	JASPAR_2020_fungi	8	6.64	100	ATATA---	---TATAT
JASPAR_2020_fungi_m114_MA0371_1	ROX1	cluster_47	JASPAR_2020_fungi	12	11.05	8	yYhATTGTTyTs	SARAACAATDRR
JASPAR_2020_fungi_m152_MA0350_1	TOD6	cluster_5	JASPAR_2020_fungi	21	9.67	999	akbcwyasCTCATCGcsyywk	MWRRSGCGATGAGSTRWGVMT
JASPAR_2020_fungi_m125_MA0382_1	SKO1	cluster_21	JASPAR_2020_fungi	10	10.10	997	--CAWTACGT	ACGTAwTG--
JASPAR_2020_fungi_m77_MA0339_1	MIG3	cluster_1	JASPAR_2020_fungi	10	6.26	101	--CCCCrCa-	-TGYGGGG--
JASPAR_2020_fungi_m21_MA1432_1	cre-1	cluster_1	JASPAR_2020_fungi	10	5.13	999	--BTSYGGGG	CCCCrsav--
JASPAR_2020_fungi_m70_MA0332_1	MET28	cluster_12	JASPAR_2020_fungi	10	8.32	203	--CTGTGG--	--CCACAG--
JASPAR_2020_fungi_m52_MA0313_1	HAP2	cluster_25	JASPAR_2020_fungi	7	5.70	4272	-TTGGy-	-RCCAA-
JASPAR_2020_fungi_m130_MA0387_1	SPT2	cluster_26	JASPAR_2020_fungi	10	7.77	211	wwTTRavkAr	YTMBTYAAWW
JASPAR_2020_fungi_m8_MA0272_1	ARG81	cluster_29	JASPAR_2020_fungi	9	8.08	279	-rTGACTCh	DGAGTCAY-
JASPAR_2020_fungi_m76_MA0338_1	MIG2	cluster_1	JASPAR_2020_fungi	10	6.37	101	--CCCCrCa-	-TGYGGGG--
JASPAR_2020_fungi_m68_MA0330_1	MBP1::SWI6	cluster_10	JASPAR_2020_fungi	9	6.81	23791	-wCGCGTy-	-RACGCGW-
JASPAR_2020_fungi_m166_MA0419_1	YAP7	cluster_11	JASPAR_2020_fungi	13	9.53	11274	aTTAGTAAkCa--	--TGMTTACTAAT
JASPAR_2020_fungi_m33_MA0420_1	ERT1	cluster_7	JASPAR_2020_fungi	9	7.93	100	-ayCGGAAy	RTTCCGRT-
JASPAR_2020_fungi_m61_MA0322_1	INO4	cluster_4	JASPAR_2020_fungi	9	9.16	266	gCATGTGAA	TTCACATGC
JASPAR_2020_fungi_m141_MA0398_1	SUM1	cluster_35	JASPAR_2020_fungi	9	6.41	100	awwATTTwt	AWAAATWWT
JASPAR_2020_fungi_m58_MA0319_1	HSF1	cluster_30	JASPAR_2020_fungi	8	7.00	101	ATGGAAca	TGTTCCAT
JASPAR_2020_fungi_m173_MA0430_1	YLR278C	cluster_8	JASPAR_2020_fungi	12	7.34	100	-WACTCCGR---	---yCGGAGTw-
JASPAR_2020_fungi_m158_MA0422_1	URC2	cluster_8	JASPAR_2020_fungi	12	7.91	101	-yCGGAgwTAw-	-WTAWCTCCGR-
JASPAR_2020_fungi_m116_MA0373_1	RPN4	cluster_12	JASPAR_2020_fungi	10	8.13	100	---gGTGGCG	CGCCACC---
JASPAR_2020_fungi_m112_MA0369_1	RLM1	cluster_40	JASPAR_2020_fungi	18	14.29	42	vrWTCTAwwwATAGmyyv	BRRKCTATWWWTAGAWYB
JASPAR_2020_fungi_m171_MA0428_1	YKL222C	cluster_8	JASPAR_2020_fungi	12	7.30	101	ATYTCCGTT---	---aACGGAraT
JASPAR_2020_fungi_m110_MA0367_1	RGT1	cluster_8	JASPAR_2020_fungi	12	6.78	101	-YCGGAWWAWYT	arwTwwTCCGr-
JASPAR_2020_fungi_m126_MA0383_1	SMP1	cluster_50	JASPAR_2020_fungi	21	6.47	999	tkacctwtAATTawaybwscw	WGSWVRTWTAATTAWAGGTMA
JASPAR_2020_fungi_m20_MA0284_1	CIN5	cluster_21	JASPAR_2020_fungi	10	7.94	101	TtAygTAAkC	GMTTACRTAA
JASPAR_2020_fungi_m107_MA0364_1	REI1	cluster_1	JASPAR_2020_fungi	10	7.98	100	--TCAGGGG-	-CCCCTGa--
JASPAR_2020_fungi_m98_MA0355_1	PHD1	cluster_15	JASPAR_2020_fungi	11	5.56	100	msmTGCAkcm-	-KGMTGCAKSK
JASPAR_2020_fungi_m162_MA0415_1	YAP1	cluster_19	JASPAR_2020_fungi	21	10.98	999	-mkktgmTTACGTAAkmycst	ASGRKMTTACGTAAKCAMMK-
JASPAR_2020_fungi_m28_MA0291_1	DAL82	cluster_22	JASPAR_2020_fungi	9	6.47	101	awwrYGCGc	GCGCRYWWT
JASPAR_2020_fungi_m150_MA0406_1	TEC1	cluster_56	JASPAR_2020_fungi	8	7.46	100	rCATTCYy	RRGAATGY
JASPAR_2020_fungi_m175_MA0433_1	YOX1	cluster_26	JASPAR_2020_fungi	10	8.04	101	--TTAATTAR	yTAATTaa--
JASPAR_2020_fungi_m69_MA0331_1	MCM1	cluster_23	JASPAR_2020_fungi	12	8.18	16231	CCyawTyrGGAA	TTCCYRAWTRGG
JASPAR_2020_fungi_m111_MA0368_1	RIM101	cluster_25	JASPAR_2020_fungi	7	8.54	100	CTTGGCR	yGCCAAG
JASPAR_2020_fungi_m16_MA0280_1	CAT8	cluster_7	JASPAR_2020_fungi	9	6.09	100	--CCGGar-	-YTCCGG--
JASPAR_2020_fungi_m73_MA0335_1	MET4	cluster_12	JASPAR_2020_fungi	10	9.57	301	AaCTGTGG--	--CCACAGTT
JASPAR_2020_fungi_m66_MA0328_2	MATALPHA2	cluster_4	JASPAR_2020_fungi	9	7.45	1000	-CrTGTAaw	WTTACAYG-
JASPAR_2020_fungi_m22_MA0285_1	CRZ1	cluster_43	JASPAR_2020_fungi	13	5.76	101	-cwmmGCCmC---	---GKGGCKKWG-
JASPAR_2020_fungi_m118_MA0375_1	RSC30	cluster_6	JASPAR_2020_fungi	10	6.97	100	-SGCGCGSG-	-csCGCGCS-
JASPAR_2020_fungi_m137_MA0394_1	STP1	cluster_6	JASPAR_2020_fungi	10	7.31	279	-yGCGGCkb-	-VMGCCGCR-
JASPAR_2020_fungi_m101_MA0358_1	PUT3	cluster_6	JASPAR_2020_fungi	10	7.29	101	-CCCGGGaa-	-TTCCCGGG-
JASPAR_2020_fungi_m54_MA0316_1	HAP5	cluster_39	JASPAR_2020_fungi	20	9.28	4710	tssgmkCTsATTGGy-----	-----RCCAATSAGMKCSSA
JASPAR_2020_fungi_m65_MA0326_1	MAC1	cluster_57	JASPAR_2020_fungi	8	9.17	1759	TTTGCTCr	YGAGCAAA
JASPAR_2020_fungi_m145_MA0402_1	SWI5	cluster_13	JASPAR_2020_fungi	8	7.87	101	DMCCAGCA	tGCTGGkh
JASPAR_2020_fungi_m129_MA0386_1	SPT15	cluster_17	JASPAR_2020_fungi	22	10.20	999	MWYSWATATATATWYCTADWB-	-vwhtaGrwATATATAtwsrwk
JASPAR_2020_fungi_m164_MA0417_1	YAP5	cluster_36	JASPAR_2020_fungi	7	5.88	281	-ArrCAT	ATGYYT-
JASPAR_2020_fungi_m92_MA1436_1	nuc-1	cluster_4	JASPAR_2020_fungi	9	8.55	999	KCACGTGK-	-mCACGTGm
JASPAR_2020_fungi_m18_MA0282_1	CEP3	cluster_7	JASPAR_2020_fungi	9	8.06	101	-yTCGGAAa	TTTCCGAR-
JASPAR_2020_fungi_m48_MA0309_1	GZF3	cluster_14	JASPAR_2020_fungi	9	7.08	101	-YSTTATCR	yGATAAsr-
JASPAR_2020_fungi_m104_MA0361_1	RDS1	cluster_9	JASPAR_2020_fungi	7	6.77	101	CGGCCGv	BCGGCCG
JASPAR_2020_fungi_m19_MA0283_1	CHA4	cluster_6	JASPAR_2020_fungi	10	7.79	100	-GGCGGRGw-	-WCYCCGCC-
JASPAR_2020_fungi_m148_MA0431_1	TDA9	cluster_1	JASPAR_2020_fungi	10	7.55	101	-aCCCCdCwy	RWGHGGGGT-
JASPAR_2020_fungi_m106_MA0363_1	REB1	cluster_18	JASPAR_2020_fungi	12	9.45	100	rTTACCCkg---	---CMGGGTAAY
JASPAR_2020_fungi_m64_MA0325_1	LYS14	cluster_8	JASPAR_2020_fungi	12	8.00	101	-AATTCCGG---	---cCGGAATt-
JASPAR_2020_fungi_m177_MA0435_1	YPR015C	cluster_59	JASPAR_2020_fungi	20	11.58	999	tkwaraCGTAAATCmtwwhh	DDWWAKGATTTACGTYTWMA
JASPAR_2020_fungi_m91_MA0421_1	NSI1	cluster_18	JASPAR_2020_fungi	12	11.31	2028	TTTACCCGGm--	--KCCGGGTAAA
JASPAR_2020_fungi_m88_MA0346_1	NHP6B	cluster_17	JASPAR_2020_fungi	22	5.62	999	-yttwyywwTATAwwwwrkdv-	-BHMYWWWWTATAWWRRWAAR-
JASPAR_2020_fungi_m117_MA0374_1	RSC3	cluster_6	JASPAR_2020_fungi	10	5.53	101	-CGCGcss--	--SSGCGCG-
JASPAR_2020_fungi_m113_MA0370_1	RME1	cluster_53	JASPAR_2020_fungi	10	6.86	271	YyyAAAGGaA	TTCCTTTRRR
JASPAR_2020_fungi_m86_MA0344_1	NHP10	cluster_6	JASPAR_2020_fungi	10	8.22	102	-gCCGGGGa-	-TCCCCGGC-
JASPAR_2020_fungi_m179_MA0437_1	YPR196W	cluster_8	JASPAR_2020_fungi	12	6.67	101	--CGGRRAAWY-	-rWTTyyCCG--
JASPAR_2020_fungi_m84_MA1434_1	NCU02182	cluster_18	JASPAR_2020_fungi	12	7.62	999	--wACCCAb---	---VTGGGTW--
JASPAR_2020_fungi_m132_MA0389_1	SRD1	cluster_2	JASPAR_2020_fungi	11	5.77	100	--aGATCTmc-	-GKAGATCT--
JASPAR_2020_fungi_m160_MA1437_1	wc-1	cluster_2	JASPAR_2020_fungi	11	7.88	999	-TCGATCGK--	--mCGATCGa-
JASPAR_2020_fungi_m133_MA0390_1	STB3	cluster_33	JASPAR_2020_fungi	23	11.07	999	MMDRAGTGAAAAAWTTTRRAC--	--gtyyaaAwTTTTTCActyhkk
JASPAR_2020_fungi_m14_MA0278_1	BAS1	cluster_37	JASPAR_2020_fungi	21	10.98	999	kcwyrgCCvGAGTCArdwyra	TYRWHYTGACTCBGGCYRWGM
JASPAR_2020_fungi_m56_MA0327_1	HMRA1	cluster_31	JASPAR_2020_fungi	9	9.01	203	--rCACAAT	ATTGTGY--
JASPAR_2020_fungi_m36_MA0297_1	FKH2	cluster_11	JASPAR_2020_fungi	13	9.32	101	----GTAAACA--	--TGTTTAC----
JASPAR_2020_fungi_m155_MA0410_1	UGA3	cluster_6	JASPAR_2020_fungi	10	7.64	100	TSCCGCSS--	--ssGCGGSA
JASPAR_2020_fungi_m159_MA0413_1	USV1	cluster_51	JASPAR_2020_fungi	20	10.99	999	dwwttmCCCCTGAAyttkks	SMMAARTTCAGGGGKAAWWH
JASPAR_2020_fungi_m87_MA0345_1	NHP6A	cluster_17	JASPAR_2020_fungi	22	7.10	999	-mtkwhywmTATATAawwwwrh	DYWWWWTTATATAKWRDWMAK-
JASPAR_2020_fungi_m85_MA0343_1	NDT80	cluster_46	JASPAR_2020_fungi	21	10.10	999	hytcckgmCACAAAAacsvaa	TTBSGTTTTTGTGKCMGGARD
JASPAR_2020_fungi_m122_MA0378_1	SFP1	cluster_33	JASPAR_2020_fungi	23	8.68	999	--wywrdrAAAAwTTTTyywykg	CMRWRRAAAAWTTTTYHYWRW--
JASPAR_2020_fungi_m96_MA0353_1	PDR3	cluster_6	JASPAR_2020_fungi	10	11.09	203	-TCCGCGGA-	-TCCGCGGA-
JASPAR_2020_fungi_m6_MA0270_1	AFT2	cluster_44	JASPAR_2020_fungi	8	7.98	100	sRCACCCs	SGGGTGYS
JASPAR_2020_fungi_m30_MA0292_1	ECM22	cluster_7	JASPAR_2020_fungi	9	6.48	100	-TCCGGAD-	-hTCCGGA-
JASPAR_2020_fungi_m181_MA0439_1	YRR1	cluster_8	JASPAR_2020_fungi	12	6.90	101	-RCGGADATAAG	cttAThtCCGy-
JASPAR_2020_fungi_m124_MA0381_1	SKN7	cluster_9	JASPAR_2020_fungi	7	5.51	101	-MYGGCC	GGCCrk-
JASPAR_2020_fungi_m43_MA0304_1	GCR1	cluster_16	JASPAR_2020_fungi	8	7.99	2649	WGGAAGCY	RGCTTCCW
JASPAR_2020_fungi_m127_MA0384_1	SNT2	cluster_3	JASPAR_2020_fungi	11	12.29	3430	YGGCGCTAYCA	TGrTAGCGCCr
JASPAR_2020_fungi_m9_MA0273_1	ARO80	cluster_49	JASPAR_2020_fungi	21	7.69	999	grkmawkCTCGGbwAkwawkh	DMWTWMTWVCCGAGMWTKMYC
JASPAR_2020_fungi_m153_MA0408_1	TOS8	cluster_29	JASPAR_2020_fungi	9	7.13	100	TTTGACAK-	-mTGTCAaa
JASPAR_2020_fungi_m35_MA0296_1	FKH1	cluster_45	JASPAR_2020_fungi	20	11.23	999	ygwwwtGTAAACAAagrrga	TCYYCTTTGTTTACAWWWCR
JASPAR_2020_fungi_m40_MA0301_1	GAT3	cluster_2	JASPAR_2020_fungi	11	5.18	100	--aGATCyamm	KKTRGATCT--
JASPAR_2020_fungi_m12_MA0276_1	ASH1	cluster_23	JASPAR_2020_fungi	12	7.44	294	CCrrRTcrGG--	--CCYGAYYYGG
JASPAR_2020_fungi_m72_MA0334_1	MET32	cluster_12	JASPAR_2020_fungi	10	6.37	100	---TGTGGCK	mGCCACa---
JASPAR_2020_fungi_m32_MA0294_1	EDS1	cluster_8	JASPAR_2020_fungi	12	7.76	101	--cGGAAaAAt-	-ATTTTTCCG--
JASPAR_2020_fungi_m4_MA0268_1	ADR1	cluster_1	JASPAR_2020_fungi	10	5.87	100	-aCCCCam--	--KTGGGGT-
JASPAR_2020_fungi_m27_MA0290_1	DAL81	cluster_54	JASPAR_2020_fungi	19	26.34	203	AAAAGCCGCGGGCGGGATT	AATCCCGCCCGCGGCTTTT
JASPAR_2020_fungi_m168_MA0424_1	YER184C	cluster_7	JASPAR_2020_fungi	9	6.41	100	hTCCGGMa-	-TKCCGGAD
JASPAR_2020_fungi_m39_MA0300_1	GAT1	cluster_14	JASPAR_2020_fungi	9	8.05	101	cyGATAAG-	-CTTATCRG
JASPAR_2020_fungi_m42_MA0303_1	GCN4	cluster_38	JASPAR_2020_fungi	21	9.34	999	crwdrkrTGAsTCAymcwtmw	WKAWGKRTGASTCAYMYHWYG
JASPAR_2020_fungi_m15_MA0279_1	CAD1	cluster_11	JASPAR_2020_fungi	13	10.86	2279	ATTArTAAkC---	---GMTTAYTAAT
JASPAR_2020_fungi_m3_MA0267_1	ACE2	cluster_13	JASPAR_2020_fungi	8	6.60	100	-mCCAGCa	TGCTGGK-
JASPAR_2020_fungi_m135_MA0392_1	STB5	cluster_8	JASPAR_2020_fungi	12	6.25	101	--CGGkgtTA--	--TAACMCCG--
JASPAR_2020_fungi_m183_MA0441_1	ZMS1	cluster_1	JASPAR_2020_fungi	10	7.21	101	WGCGGGGWA-	-twCCCCgCw
JASPAR_2020_fungi_m82_MA0342_1	MSN4	cluster_1	JASPAR_2020_fungi	10	6.43	100	--CCCCT---	---AGGGG--
JASPAR_2020_fungi_m156_MA0412_1	UME6	cluster_43	JASPAR_2020_fungi	13	13.37	18	AWWTAGCCGCCSA	TsGGCGGCTAwwT
JASPAR_2020_fungi_m165_MA0418_1	YAP6	cluster_19	JASPAR_2020_fungi	21	7.78	999	sgkywgmTTAyGTaAkcrrc-	-GYYGMTTACRTAAKCWRMCS
JASPAR_2020_fungi_m57_MA0318_1	HMRA2	cluster_4	JASPAR_2020_fungi	9	7.42	101	-crTGTAAw	WTTACAYG-
JASPAR_2020_fungi_m59_MA0320_1	IME1	cluster_6	JASPAR_2020_fungi	10	9.59	301	--CTCSGCGG	CCGCsGAG--
JASPAR_2020_fungi_m147_MA0404_1	TBS1	cluster_28	JASPAR_2020_fungi	8	6.82	101	CGGAtCCG	CGGATCCG
JASPAR_2020_fungi_m146_MA0403_1	TBF1	cluster_1	JASPAR_2020_fungi	10	6.10	101	-YTAGGGYT-	-arCCCTAr-
JASPAR_2020_fungi_m108_MA0365_1	RFX1	cluster_41	JASPAR_2020_fungi	8	7.82	100	sGTTRCyA	TRGYAACS
JASPAR_2020_fungi_m182_MA0440_1	ZAP1	cluster_64	JASPAR_2020_fungi	15	15.27	279	ACCyTmArGGTyrTG	CAYRACCYTKARGGT
JASPAR_2020_fungi_m50_MA0311_1	HAL9	cluster_7	JASPAR_2020_fungi	9	6.27	99	---YTCCG-	-CGGAr---
JASPAR_2020_fungi_m176_MA0434_1	YPR013C	cluster_2	JASPAR_2020_fungi	11	7.52	100	--KGATYKRCR	yGymrATCm--
JASPAR_2020_fungi_m1_MA0265_1	ABF1	cluster_62	JASPAR_2020_fungi	16	8.14	101	yCGTakrwartGAyaw	WTRTCAYTWYMTACGR
JASPAR_2020_fungi_m29_MA0351_1	DOT6	cluster_5	JASPAR_2020_fungi	21	9.25	999	wbykkcwsCTCATCGcvycyt	ARGRBGCGATGAGSWGMMRVW
JASPAR_2020_fungi_m90_MA0347_1	NRG1	cluster_52	JASPAR_2020_fungi	20	9.84	999	ytvrrymAGGGTCCwtbgcw	WGCVAWGGACCCTKRYYBAR
JASPAR_2020_fungi_m136_MA0393_1	STE12	cluster_30	JASPAR_2020_fungi	8	7.15	29965	-TGAAACr	YGTTTCA-
JASPAR_2020_fungi_m83_MA0929_1	NCU00019	cluster_11	JASPAR_2020_fungi	13	6.57	1001	-TTTRTTTACWAT	atwGTAAAyAaa-
JASPAR_2020_fungi_m24_MA0287_1	CUP2	cluster_48	JASPAR_2020_fungi	11	10.84	9	CAGCrrAAAwG	CWTTTYYGCTG
JASPAR_2020_fungi_m74_MA0336_1	MGA1	cluster_24	JASPAR_2020_fungi	21	8.47	999	wrsrhtAtAGAACAythhwwm	KWWDDARTGTTCTATADYSYW
JASPAR_2020_fungi_m170_MA0426_1	YHP1	cluster_26	JASPAR_2020_fungi	10	8.32	203	---CAATTA-	-TAATTG---
JASPAR_2020_fungi_m93_MA0348_1	OAF1	cluster_8	JASPAR_2020_fungi	12	7.17	101	-TATCYCCGR--	--yCGGrGaTa-
JASPAR_2020_fungi_m17_MA0281_1	CBF1	cluster_4	JASPAR_2020_fungi	9	8.64	101	gCACGTGA-	-TCACGTGC
JASPAR_2020_fungi_m149_MA0405_1	TEA1	cluster_22	JASPAR_2020_fungi	9	6.46	100	-AWGYSCGC	GCGsrCwt-
JASPAR_2020_fungi_m102_MA0359_1	RAP1	cluster_18	JASPAR_2020_fungi	12	8.78	101	--CACCCRtACA	TGTAYGGGTG--
JASPAR_2020_fungi_m172_MA0429_1	YLL054C	cluster_9	JASPAR_2020_fungi	7	5.93	100	CGGccGa	TCGGCCG
JASPAR_2020_fungi_m178_MA0436_1	YPR022C	cluster_1	JASPAR_2020_fungi	10	7.46	101	--SGTGGGG-	-cCCCACs--
JASPAR_2020_fungi_m63_MA0324_1	LEU3	cluster_23	JASPAR_2020_fungi	12	8.50	101	SCGSWDMMGG--	--CCkkhwsCGS
JASPAR_2020_fungi_m11_MA0275_1	ASG1	cluster_7	JASPAR_2020_fungi	9	6.31	100	--CCGGAw-	-WTCCGG--
JASPAR_2020_fungi_m67_MA0329_1	MBP1	cluster_10	JASPAR_2020_fungi	9	5.05	100	-aCGCGwm-	-KWCGCGT-
JASPAR_2020_fungi_m2_MA0266_1	ABF2	cluster_42	JASPAR_2020_fungi	7	7.39	101	sTCTAGA	TCTAGAS
JASPAR_2020_fungi_m120_MA0376_1	RTG3	cluster_60	JASPAR_2020_fungi	20	9.03	999	rkmkkakCACGTGmyyrvwc	GWBYRRKCACGTGMTMMKMY
JASPAR_2020_fungi_m23_MA0286_1	CST6	cluster_21	JASPAR_2020_fungi	10	8.04	101	TKACGTCAY-	-rTGACGTma
JASPAR_2020_fungi_m26_MA0289_1	DAL80	cluster_14	JASPAR_2020_fungi	9	7.61	101	-cGATAAG-	-CTTATCG-
JASPAR_2020_fungi_m25_MA0288_1	CUP9	cluster_31	JASPAR_2020_fungi	9	7.51	100	TGACAyAww	WWTRTGTCA
JASPAR_2020_fungi_m142_MA0399_1	SUT1	cluster_6	JASPAR_2020_fungi	10	5.19	272	-cGCGGgG--	--CCCCGCG-
JASPAR_2020_fungi_m31_MA0293_1	ECM23	cluster_2	JASPAR_2020_fungi	11	5.20	101	mmAGATCtwam	KTWAGATCTKK
JASPAR_2020_fungi_m75_MA0337_1	MIG1	cluster_1	JASPAR_2020_fungi	10	6.34	100	-mCCCCrs--	--SYGGGGK-
JASPAR_2020_fungi_m131_MA0388_1	SPT23	cluster_32	JASPAR_2020_fungi	9	6.76	251	rAAATsaA-	-TTSATTTY
JASPAR_2020_fungi_m100_MA0357_1	PHO4	cluster_4	JASPAR_2020_fungi	9	7.63	998	SCACGTGS-	-sCACGTGs
JASPAR_2020_fungi_m157_MA0411_1	UPC2	cluster_55	JASPAR_2020_fungi	8	6.02	101	-yrwACGA	TCGTWYR-
JASPAR_2020_fungi_m123_MA0380_1	SIP4	cluster_7	JASPAR_2020_fungi	9	6.02	101	-YCCGGRR-	-yYCCGgr-
JASPAR_2020_fungi_m5_MA0269_1	AFT1	cluster_58	JASPAR_2020_fungi	21	9.44	999	ttacatAkTGCACCCsmwwkg	CMWWKSGGGTGCAMTATGTAA
JASPAR_2020_fungi_m163_MA0416_1	YAP3	cluster_21	JASPAR_2020_fungi	10	8.59	100	-TACGTAAT-	-aTTACGTa-
JASPAR_2020_fungi_m45_MA0306_1	GIS1	cluster_1	JASPAR_2020_fungi	10	6.93	100	-wCCCCTwww	WWWAGGGGW-
JASPAR_2020_fungi_m169_MA0425_1	YGR067C	cluster_34	JASPAR_2020_fungi	16	7.11	101	--YVHHRRDGHGGGGY	rCCCCdChyyddbr--
JASPAR_2020_fungi_m41_MA0302_1	GAT4	cluster_2	JASPAR_2020_fungi	11	6.63	101	ahAGATCyama	TKTRGATCTDT
JASPAR_2020_fungi_m51_MA0312_1	HAP1	cluster_8	JASPAR_2020_fungi	12	7.02	100	--CGGAswTa--	--TAWSTCCG--
JASPAR_2020_fungi_m7_MA0271_1	ARG80	cluster_29	JASPAR_2020_fungi	9	6.30	301	--wGACkC-	-GMGTCW--
JASPAR_2020_fungi_m60_MA0321_1	INO2	cluster_4	JASPAR_2020_fungi	9	8.88	275	GCATGTGAA	TTCACATGC
JASPAR_2020_fungi_m121_MA0377_1	SFL1	cluster_24	JASPAR_2020_fungi	21	7.59	999	wmrmraAtmGAAGaaawawww	WWWTWTTTCTTCKATTYKYKW
JASPAR_2020_fungi_m128_MA0385_1	SOK2	cluster_15	JASPAR_2020_fungi	11	5.53	101	acmTGCAkgma	TKCMTGCAKGT
JASPAR_2020_fungi_m99_MA0356_1	PHO2	cluster_26	JASPAR_2020_fungi	10	5.16	101	----WAWTAW	wTAwTw----
JASPAR_2020_fungi_m143_MA0400_1	SUT2	cluster_20	JASPAR_2020_fungi	21	10.06	999	-wkrwtrAASTCCGArmwwbw	WVWWKYTCGGASTTYAWYMW-
JASPAR_2020_fungi_m71_MA0333_1	MET31	cluster_12	JASPAR_2020_fungi	10	7.87	101	-CGCCACASY	rstGTGGCG-
JASPAR_2020_fungi_m134_MA0391_1	STB4	cluster_7	JASPAR_2020_fungi	9	7.89	100	-yTCGGAA-	-TTCCGAR-
JASPAR_2020_fungi_m34_MA0295_1	FHL1	cluster_10	JASPAR_2020_fungi	9	8.04	102	TKTGCGTC-	-GACGCAma
JASPAR_2020_fungi_m97_MA0354_1	PDR8	cluster_8	JASPAR_2020_fungi	12	8.50	101	-rCGGAGAT---	---ATCTCCGY-
JASPAR_2020_fungi_m95_MA0352_1	PDR1	cluster_6	JASPAR_2020_fungi	10	6.94	100	-yCCGCGGa-	-TCCGCGGR-

Click on the column names to change the order of the data.
Write the name of one cluster, collection or a pattern in the Search window.

Exported files

File	Description
Pairwise comparison	This table shows the pairwise comparison between all the input motifs using different metrics. This is the compare-matrices result.
Matrix description	This table shows information of each input motif.
Cluster-wise Motif Files [zip]	One TRANSFAC file is generated for each cluster including all the input motifs grouped in the corresponding cluster.
Root motifs	A file with the root matrix of each cluster.
Motif collections per cluster	A tab separated file containing the counts of motif of each collection on each cluster.
Clusters	A tab separated file containing the clusters and their correspondng motifs.
Central motifs IDs	A tab separated file containing the central motif, that one who is the most similar to all the others motif in the same cluster.
Central motifs (in TRANSFAC format)	A transfac file containing the central motif, that one who is the most similar to all the others motif within the same cluster.
Input motifs	The input motifs analyzed with matrix-clustering.

References
1. Castro-Mondragon JA et al. RSAT matrix-clustering: dynamic exploration and redundancy reduction of transcription factor binding motif collections. doi: 10.1093/nar/gkx314; Nucleic Acids Research (2017)
2. Fornes O, Castro-Mondragon JA et al. JASPAR 2020: update of the open-access database of transcription factor binding profiles. Nucleic Acids Research (2019)
Contact
- Jaime A Castro-Mondragon - j[dot]a[dot]c[dot]mondragon[at]ncmm[dot]uio[dot]no
- Anthony Mathelier - anthony[dot]mathelier[at]ncmm[dot]uio[dot]no

RSAT - matrix-clustering result

Analysis: JASPAR_2020_fungi (07/10/2019 09:35)

Command

Results Summary

Clusters Summary Table

Individual Cluster View

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Branch Motifs

Definitions

Individual Motif View

Heatmap View

Exported files