JASPAR Collection CNE

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Total 233 profiles

Display profiles
ID Name Consensus Species Sequence logo
CN0011.1 LM11 ATGGAAATGCTGACAGAMCCTTAA Homo sapiens
CN0012.1 LM12 RTGGCCTGAAAGAGTTAATGCW Homo sapiens
CN0013.1 LM13 WTGCTAATTAGCA Homo sapiens
CN0014.1 LM14 WNATCCAGATGTTTGGCAYYW Homo sapiens
CN0015.1 LM15 MATTTGCATGCAAATGA Homo sapiens
CN0016.1 LM16 CTTTGARATCCTYAGATGAAAGR Homo sapiens
CN0017.1 LM17 WNWRCATCTGRTTTGCATTW Homo sapiens
CN0018.1 LM18 ATTTGCATNTSATTTGCAT Homo sapiens
CN0019.1 LM19 TGCTAATTAGCAGCH Homo sapiens
CN0020.1 LM20 TGACAGCTGTCA Homo sapiens
Showing 10 profiles of page 2 from 24 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.