Detailed information of matrix profile MA0954.1

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Profile summary
Name: ATHB-7
Matrix ID: MA0954.1
Class: Homeo domain factors
Family: HD-ZIP factors
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: PBM
Validation: 11247607
Uniprot ID: P46897  
Source: 25215497
Comment:

Sequence logo

Frequency matrix

         
A [ 152 27 1000 1000 0 0 1000 291 183 223 ]
C [ 338 828 0 0 0 1000 0 0 98 223 ]
G [ 152 27 0 0 0 0 0 0 190 330 ]
T [ 358 118 0 0 1000 0 0 709 528 223 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0954.1 MA0954 1 ATHB-7 Arabidopsis thaliana
HD-ZIP factors Homeo domain factors
MA0954.2 MA0954 2 ATHB7 Arabidopsis thaliana
Homeo domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0444.1

ChIP-seq Centrality
log(P-value): -2300.71

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0444.1

ChIP-seq Centrality
log(P-value): -2232.11

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: