Detailed information of matrix profile MA1065.1

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Profile summary
Name: TCP20
Matrix ID: MA1065.1
Class: Basic helix-loop-helix factors (bHLH)
Family: TCP domain
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: PBM
Validation: 21241251
Uniprot ID: Q9LSD5  
Source: 25215497
Comment:

Sequence logo

Frequency matrix

         
A [ 244 205 67 38 34 0 66 134 71 121 ]
C [ 244 157 84 77 3 1 1 418 795 802 ]
G [ 227 338 825 61 956 997 878 356 23 30 ]
T [ 286 300 25 825 7 2 55 91 111 46 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1065.1 MA1065 1 TCP20 Arabidopsis thaliana
TCP domain Basic helix-loop-helix factors (bHLH)
MA1065.2 MA1065 2 TCP20 Arabidopsis thaliana
TCP domain Basic helix-loop-helix factors (bHLH)
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0395.1

ChIP-seq Centrality
log(P-value): -2424.07

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0395.1

ChIP-seq Centrality
log(P-value): -2759.12

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: