Detailed information of matrix profile MA1192.1

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Profile summary
Name: At5g58900
Matrix ID: MA1192.1
Class: Helix-Turn-Helix
Family: Myb-related
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID:
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 246 187 218 229 0 580 0 579 578 25 226 156 153 232 188 ]
C [ 27 65 47 7 0 0 0 0 0 53 36 62 55 53 63 ]
G [ 25 142 57 313 575 0 0 0 1 443 259 41 65 108 131 ]
T [ 282 186 258 31 5 0 580 1 1 59 59 321 307 187 198 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1192.1 MA1192 1 At5g58900 Arabidopsis thaliana
Myb-related Helix-Turn-Helix
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0442.1

ChIP-seq Centrality
log(P-value): -7201.53

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0442.1

ChIP-seq Centrality
log(P-value): -7132.43

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: