Detailed information of matrix profile MA1193.1

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Profile summary
Name: At2g38090
Matrix ID: MA1193.1
Class: Helix-Turn-Helix
Family: Myb-related
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID:
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 30 38 28 32 24 34 17 26 20 0 64 0 62 63 12 18 42 7 26 30 21 ]
C [ 13 10 10 1 2 1 9 7 0 0 0 0 1 0 3 10 4 3 9 6 0 ]
G [ 11 8 12 21 18 0 13 0 42 64 0 1 1 0 40 24 3 7 24 18 24 ]
T [ 10 8 14 10 20 29 25 31 2 0 0 63 0 1 9 12 15 47 5 10 19 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1193.1 MA1193 1 At2g38090 Arabidopsis thaliana
Myb-related Helix-Turn-Helix
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: