Detailed information of matrix profile MA1238.1

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Profile summary
Name: ERF38
Matrix ID: MA1238.1
Class: AP2/ERF domain
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 15319480
Uniprot ID: Q9ZQP3  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 28 0 65 0 0 0 0 58 179 198 127 178 166 144 185 ]
C [ 122 0 4 598 0 0 151 10 48 191 57 70 157 74 79 ]
G [ 0 597 49 0 598 598 0 491 315 58 279 205 86 251 222 ]
T [ 448 1 480 0 0 0 447 39 56 151 135 145 189 129 112 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1238.1 MA1238 1 ERF38 Arabidopsis thaliana
AP2/ERF domain
MA1238.2 MA1238 2 ERF38 Arabidopsis thaliana
AP2/ERF domain
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0334.1

ChIP-seq Centrality
log(P-value): -6871.19

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0334.1

ChIP-seq Centrality
log(P-value): -6949.48

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: