Detailed information of matrix profile MA1356.1

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Profile summary
Name: TRP2
Matrix ID: MA1356.1
Class: Helix-Turn-Helix
Family: Myb-related
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 22197883
Uniprot ID: Q9SNB9  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 45 338 61 24 47 10 0 3 418 9 3 2 1 3 1 349 91 30 56 66 35 ]
C [ 15 7 7 0 1 2 2 13 0 0 2 0 0 2 1 4 15 28 22 18 21 ]
G [ 28 43 303 383 350 4 1 2 3 416 414 416 2 1 0 0 272 344 303 24 34 ]
T [ 337 37 54 18 27 409 422 407 4 0 6 7 422 419 423 72 47 23 44 317 335 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1356.1 MA1356 1 TRP2 Arabidopsis thaliana
Myb-related Helix-Turn-Helix
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0410.1

ChIP-seq Centrality
log(P-value): -238.539

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0410.1

ChIP-seq Centrality
log(P-value): -210.532

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: