Detailed information of matrix profile MA1365.2

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Profile summary
Name: AT5G47660
Matrix ID: MA1365.2
Class: Helix-Turn-Helix
Family: Trihelix
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID: Q9FGJ1  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 2448 1466 549 0 0 5302 5236 4920 4790 2233 2014 ]
C [ 540 1149 76 0 14 30 8 23 1 631 822 ]
G [ 1096 808 4639 5429 0 38 50 104 34 685 679 ]
T [ 1345 2006 165 0 5415 59 135 382 604 1880 1914 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1365.1 MA1365 1 MNJ7.25 Arabidopsis thaliana
Trihelix Tryptophan cluster factors
MA1365.2 MA1365 2 AT5G47660 Arabidopsis thaliana
Trihelix Helix-Turn-Helix
     

log(P-value) = -5066.18

TFFM details

TFFM ID: TFFM0652.1

ChIP-seq Centrality
log(P-value): -8057.51

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0652.1

ChIP-seq Centrality
log(P-value): -7845.66

TFFM detailed summary logos

Description:

Alias:

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Consensus:

Included Models:

GC Content: