Detailed information of matrix profile MA1368.1

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Profile summary
Name: GT-4
Matrix ID: MA1368.1
Class: Tryptophan cluster factors
Family: Trihelix
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID: Q9LU92  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 12 13 16 15 51 44 41 36 15 0 0 76 77 0 0 61 0 17 0 0 0 ]
C [ 4 7 7 7 10 8 5 6 16 13 0 0 0 74 61 2 16 0 0 0 3 ]
G [ 38 41 6 10 2 4 23 3 9 2 1 2 1 0 0 15 0 61 78 0 0 ]
T [ 24 17 49 46 15 22 9 33 38 63 77 0 0 4 17 0 62 0 0 78 75 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1368.1 MA1368 1 GT-4 Arabidopsis thaliana
Trihelix Tryptophan cluster factors
MA1368.2 MA1368 2 GT-4 Arabidopsis thaliana
Trihelix Helix-Turn-Helix
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: