Detailed information of matrix profile MA1439.1

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Profile summary
Name: elt-6
Matrix ID: MA1439.1
Class: Other C4 zinc finger-type factors
Family: GATA-type zinc fingers
Collection: CORE
Taxon: Nematodes
Species: Caenorhabditis briggsae
Data Type: PBM
Validation: 18662544
Uniprot ID: A8XI59  
Source: 31133749
Comment: elt-3 is part of a GATA factor transcriptional hierarchy that specifies hypodermal development in the embryo. In this hierarchy, elt-3 expression is activated by elt-1(+) but repressed by elt-5(+) and elt-6(+) (elt-1, elt-5, and elt-6 each encode GATA tra

Sequence logo

Frequency matrix

         
A [ 183 132 144 992 41 1 934 131 ]
C [ 318 99 8 0 0 996 5 338 ]
G [ 302 36 44 5 1 0 18 359 ]
T [ 195 731 801 1 956 2 41 170 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1439.1 MA1439 1 elt-6 Caenorhabditis briggsae
GATA-type zinc fingers Other C4 zinc finger-type factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

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