Detailed information of matrix profile MA1442.1

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Profile summary
Name: mab-5
Matrix ID: MA1442.1
Class: Homeo domain factors
Family:
Collection: CORE
Taxon: Nematodes
Species: Caenorhabditis briggsae
Data Type: PBM
Validation: 18585359
Uniprot ID: Q9GZ03  
Source: 31133749
Comment: like HOXA1, mab-5 has I,Q, M at positions 47, 50, 54. Hence, it binds to TAATTA.

Sequence logo

Frequency matrix

         
A [ 47 839 946 16 0 931 783 54 ]
C [ 190 60 17 0 0 0 39 81 ]
G [ 0 20 0 0 0 34 98 81 ]
T [ 761 80 35 982 999 34 78 783 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1442.1 MA1442 1 mab-5 Caenorhabditis briggsae
Homeo domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

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