Detailed information of matrix profile MA1531.1

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Profile summary
Name: NR1D1
Matrix ID: MA1531.1
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 14559106
Uniprot ID: P20393  
Source: 28473536
Comment: ONLY IF first 5 bp are removed!!!

Sequence logo

Frequency matrix

         
A [ 3233 16 51 0 0 6595 625 20 3576 0 8 213 1 6595 1674 ]
C [ 358 2 0 206 6595 2 1241 117 92 0 0 429 6595 4 1532 ]
G [ 3362 6595 6595 1647 2 2 4428 213 3018 6595 6595 700 89 917 1809 ]
T [ 43 723 12 6595 4243 7 301 6595 11 1113 6 6595 344 20 1580 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1531.1 MA1531 1 NR1D1 Homo sapiens
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

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