Detailed information of matrix profile MA1553.1

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Profile summary
Name: RARG(var.3)
Matrix ID: MA1553.1
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 1738600
Uniprot ID: P13631  
Source: 28473536
Comment: additional binding mode

Sequence logo

Frequency matrix

         
A [ 1689 2761 111 39 344 28 2607 33 91 3442 997 106 54 427 ]
C [ 296 332 37 28 293 3442 9 50 46 196 3442 3442 687 998 ]
G [ 978 681 3442 3442 323 58 835 13 3442 128 5 18 275 282 ]
T [ 479 108 156 1109 3442 150 22 3442 12 200 12 48 2756 1736 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1553.1 MA1553 1 RARG(var.3) Homo sapiens
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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