Detailed information of matrix profile MA1681.1

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Profile summary
Name: SRM1
Matrix ID: MA1681.1
Class: Helix-Turn-Helix
Family: Myb
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID: Q9FNN6  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 970 1445 1909 299 158 77 87 3107 25 10 334 1075 913 1250 ]
C [ 543 390 234 1692 2774 41 25 13 19 3125 631 443 709 290 ]
G [ 392 357 264 246 128 27 21 10 44 4 135 358 375 254 ]
T [ 1245 958 743 913 90 3005 3017 20 3062 11 2050 1274 1153 1356 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1681.1 MA1681 1 SRM1 Arabidopsis thaliana
Myb Helix-Turn-Helix
     

log(P-value) = -1956.18

TFFM details

TFFM ID: TFFM0691.1

ChIP-seq Centrality
log(P-value): -2241.22

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0691.1

ChIP-seq Centrality
log(P-value): -2201.56

TFFM detailed summary logos

Description:

Alias:

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Included Models:

GC Content: