Detailed information of matrix profile PB0171.1

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Profile summary
Name: Sox18_2
Matrix ID: PB0171.1
Class: Other Alpha-Helix
Family: High Mobility Group box (HMG)
Collection: PBM
Taxon: Vertebrates
Species: Mus musculus
Data Type: universal protein binding microarray (PBM)
Validation: 19443739
Uniprot ID: P43680  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 23 16 37 11 4 36 64 85 6 10 15 55 26 29 28 29 ]
C [ 14 20 17 39 26 4 18 2 7 7 45 15 17 12 34 31 ]
G [ 45 36 29 31 15 45 7 7 2 18 4 26 20 34 13 22 ]
T [ 18 28 17 19 55 15 10 6 85 64 36 4 38 26 25 18 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
PB0171.1 PB0171 1 Sox18_2 Mus musculus
High Mobility Group box (HMG) Other Alpha-Helix
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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Consensus:

Included Models:

GC Content: