Detailed information of matrix profile PH0129.1

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Profile summary
Name: Otx1
Matrix ID: PH0129.1
Class: Helix-Turn-Helix
Family: Homeo
Collection: PBM_HOMEO
Taxon: Vertebrates
Species: Mus musculus
Data Type: universal protein binding microarray (PBM)
Validation: 18585359
Uniprot ID: P80205  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 30 19 37 43 18 8 1 95 0 1 94 69 12 29 24 32 19 ]
C [ 15 10 11 5 20 0 0 4 0 0 0 3 13 13 24 22 26 ]
G [ 30 49 16 47 61 92 99 0 0 0 0 14 10 9 20 16 24 ]
T [ 25 22 36 5 2 0 1 0 99 98 6 14 66 49 32 30 31 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
PH0129.1 PH0129 1 Otx1 Mus musculus
Homeo Helix-Turn-Helix
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

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Consensus:

Included Models:

GC Content: