Detailed information of matrix profile UN0358.1

  1. Home
  2. Matrix > UN0358.1
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: ATMYB13
Matrix ID: UN0358.1
Class: Tryptophan cluster factors
Family: Myb/SANT domain factors
Collection: UNVALIDATED
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation:
Uniprot ID: Q9LNC9  
Source: 27203113
Comment: not supported by literature

Sequence logo

Frequency matrix

         
A [ 348 324 349 215 140 60 1107 107 10 905 1106 90 35 728 390 375 ]
C [ 300 265 320 472 581 914 5 1022 1117 46 11 1034 1016 191 360 313 ]
G [ 168 214 157 147 70 36 11 8 6 17 22 5 16 95 106 153 ]
T [ 332 345 322 314 357 138 25 11 15 180 9 19 81 134 292 307 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0358.1 UN0358 1 ATMYB13 Arabidopsis thaliana
Myb/SANT domain factors Tryptophan cluster factors
     

log(P-value) = -615.46

TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: