Detailed information of matrix profile MA0035.2

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Profile summary
Name: Gata1
Matrix ID: MA0035.2
Class: Other C4 zinc finger-type factors
Family: GATA-type zinc fingers
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: ChIP-seq
Validation:
Uniprot ID: P17679  
Source:
Comment: Data is from Frank Grosveld's Lab.

Sequence logo

Frequency matrix

         
A [ 1423 708 2782 0 4000 27 3887 3550 799 1432 1487 ]
C [ 560 1633 31 0 0 29 0 4 681 897 829 ]
G [ 1242 1235 10 4000 0 109 6 383 2296 1360 1099 ]
T [ 775 424 1177 0 0 3835 107 63 224 311 585 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0035.1 MA0035 1 Gata1 Mus musculus
GATA-type zinc fingers Other C4 zinc finger-type factors
MA0035.2 MA0035 2 Gata1 Mus musculus
GATA-type zinc fingers Other C4 zinc finger-type factors
MA0035.3 MA0035 3 Gata1 Mus musculus
GATA-type zinc fingers Other C4 zinc finger-type factors
MA0035.4 MA0035 4 GATA1 Homo sapiens
GATA-type zinc fingers Other C4 zinc finger-type factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: