Detailed information of matrix profile MA0544.1

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Profile summary
Name: snpc-4
Matrix ID: MA0544.1
Class: Tryptophan cluster factors
Family: Myb/SANT domain factors
Collection: CORE
Taxon: Nematodes
Species: Caenorhabditis elegans
Data Type: ChIP-seq
Validation: 22345127
Uniprot ID: P91868  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 169 16 4 101 27 5 12 2 306 0 270 38 ]
C [ 37 1 296 30 15 299 278 0 0 310 3 175 ]
G [ 65 293 0 179 256 2 12 305 2 0 34 7 ]
T [ 39 0 10 0 12 4 8 3 2 0 3 90 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0544.1 MA0544 1 snpc-4 Caenorhabditis elegans
Myb/SANT domain factors Tryptophan cluster factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0584.1

ChIP-seq Centrality
log(P-value): -581.424

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0584.1

ChIP-seq Centrality
log(P-value): -618.645

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: