Detailed information of matrix profile MA0558.1

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Profile summary
Name: FLC
Matrix ID: MA0558.1
Class: MADS box factors
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: ChIP-seq
Validation: 21464308
Uniprot ID: Q5Q9J1  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 121 90 95 82 78 54 9 135 198 261 233 193 78 141 0 217 268 257 62 109 103 ]
C [ 44 61 37 26 25 193 185 70 10 0 3 3 11 0 0 21 3 1 43 47 50 ]
G [ 45 63 21 36 66 12 4 37 38 3 3 18 15 134 275 6 4 15 148 17 29 ]
T [ 65 61 122 131 106 16 77 33 29 11 36 61 171 0 0 31 0 2 22 102 93 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0558.1 MA0558 1 FLC Arabidopsis thaliana
MADS box factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0483.1

ChIP-seq Centrality
log(P-value): -305.639

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0483.1

ChIP-seq Centrality
log(P-value): -294.925

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: