Detailed information of matrix profile MA0587.1

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Profile summary
Name: TCP16
Matrix ID: MA0587.1
Class: Basic helix-loop-helix factors (bHLH)
Family: TCP domain
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: SELEX
Validation: 22074922
Uniprot ID: Q9M1U4  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 3 1 0 0 32 1 0 0 18 12 ]
C [ 0 3 0 0 8 60 64 64 10 20 ]
G [ 60 0 64 64 15 2 0 0 29 26 ]
T [ 1 60 0 0 9 1 0 0 7 6 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0587.1 MA0587 1 TCP16 Arabidopsis thaliana
TCP domain Basic helix-loop-helix factors (bHLH)
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: