Detailed information of matrix profile MA0670.1

  1. Home
  2. Matrix > MA0670.1

Profile summary
Name: NFIA
Matrix ID: MA0670.1
Class: SMAD/NF-1 DNA-binding domain factors
Family: Nuclear factor 1
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 10085123
Uniprot ID: Q12857  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 22969 20706 0 0 0 0 89071 89418 23752 27709 ]
C [ 22347 14274 0 0 93597 93394 0 0 21852 14439 ]
G [ 24321 35089 0 98253 0 0 0 0 29423 16505 ]
T [ 22282 23019 95496 0 0 0 0 0 17410 32052 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0670.1 MA0670 1 NFIA Homo sapiens
Nuclear factor 1 SMAD/NF-1 DNA-binding domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0537.1

ChIP-seq Centrality
log(P-value): -3351.73

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0537.1

ChIP-seq Centrality
log(P-value): -3097.53

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: