Detailed information of matrix profile MA0700.1

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Profile summary
Name: LHX2
Matrix ID: MA0700.1
Class: Homeo domain factors
Family: HD-LIM factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 18585360
Uniprot ID: P50458  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 16039 3769 633 48415 48415 0 259 48415 19244 7653 ]
C [ 10579 48415 15833 6090 0 0 1120 23 6815 16953 ]
G [ 15546 6413 67 288 63 0 2834 8137 15319 11964 ]
T [ 6251 8481 48415 621 0 48415 48415 520 7038 11845 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0700.1 MA0700 1 LHX2 Homo sapiens
HD-LIM factors Homeo domain factors
MA0700.2 MA0700 2 LHX2 Homo sapiens
HD-LIM factors Homeo domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0185.1

ChIP-seq Centrality
log(P-value): -2746.12

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0185.1

ChIP-seq Centrality
log(P-value): -2800.72

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: