Detailed information of matrix profile MA0745.1

  1. Home
  2. Matrix > MA0745.1

Profile summary
Name: SNAI2
Matrix ID: MA0745.1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc finger factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 25100569
Uniprot ID: O43623  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 37982 56979 5150 110706 16150 361 57 16003 9858 ]
C [ 15746 4756 110706 1908 1458 0 525 5615 37564 ]
G [ 35246 53727 2678 784 110706 110706 0 110706 25335 ]
T [ 21733 16594 4022 3454 3864 323 110706 21327 37949 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0745.1 MA0745 1 SNAI2 Homo sapiens
More than 3 adjacent zinc finger factors C2H2 zinc finger factors
MA0745.2 MA0745 2 SNAI2 Homo sapiens
More than 3 adjacent zinc finger factors C2H2 zinc finger factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0203.1

ChIP-seq Centrality
log(P-value): -41620.3

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0203.1

ChIP-seq Centrality
log(P-value): -41374.4

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: