Detailed information of matrix profile MA0814.1

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Profile summary
Name: TFAP2C(var.2)
Matrix ID: MA0814.1
Class: Basic helix-span-helix factors (bHSH)
Family: AP-2
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 16420676
Uniprot ID: Q92754  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 2750 159 0 3 148 1124 5725 1038 0 127 3008 ]
C [ 2292 836 7757 7757 1751 2896 837 85 108 7064 509 ]
G [ 566 6921 148 33 1117 2871 1139 7757 7757 694 1870 ]
T [ 2150 71 0 595 4740 867 56 17 0 97 2370 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0814.1 MA0814 1 TFAP2C(var.2) Homo sapiens
AP-2 Basic helix-span-helix factors (bHSH)
MA0814.2 MA0814 2 TFAP2C(var.2) Homo sapiens
AP-2 Basic helix-span-helix factors (bHSH)
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0118.1

ChIP-seq Centrality
log(P-value): -9745.79

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0118.1

ChIP-seq Centrality
log(P-value): -7426.44

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: