Detailed information of matrix profile MA0832.1

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Profile summary
Name: Tcf21
Matrix ID: MA0832.1
Class: Basic helix-loop-helix factors (bHLH)
Family: Tal-related factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: HT-SELEX
Validation: 26020271
Uniprot ID: O35437  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 55 28 171 171 0 171 0 0 0 0 0 5 50 30 ]
C [ 29 76 1 10 171 1 0 171 0 0 4 23 23 49 ]
G [ 70 22 23 0 0 0 171 1 0 171 20 0 80 32 ]
T [ 17 46 3 0 0 0 2 1 171 0 171 171 19 60 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0832.1 MA0832 1 Tcf21 Mus musculus
Tal-related factors Basic helix-loop-helix factors (bHLH)
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0600.1

ChIP-seq Centrality
log(P-value): -17225.5

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0600.1

ChIP-seq Centrality
log(P-value): -17221.3

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: