Detailed information of matrix profile MA0901.1

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Profile summary
Name: HOXB13
Matrix ID: MA0901.1
Class: Homeo domain factors
Family: HOX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 18585359
Uniprot ID: Q92826  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 277 116 2781 2781 0 2781 2781 2781 2781 988 ]
C [ 2781 2781 1000 22 7 22 0 77 550 1014 ]
G [ 518 14 12 38 0 26 0 1 168 192 ]
T [ 161 691 521 104 2781 304 17 18 345 587 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0901.1 MA0901 1 HOXB13 Homo sapiens
HOX-related factors Homeo domain factors
MA0901.2 MA0901 2 HOXB13 Homo sapiens
HOX-related factors Homeo domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0180.1

ChIP-seq Centrality
log(P-value): -5995.15

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0180.1

ChIP-seq Centrality
log(P-value): -6079.33

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: