Detailed information of matrix profile MA1200.1

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Profile summary
Name: AGL25
Matrix ID: MA1200.1
Class: MADS box factors
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 12743119
Uniprot ID: Q9S7Q7  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 32 41 51 48 21 102 117 163 131 152 105 20 0 223 230 218 13 69 ]
C [ 27 20 16 154 141 50 22 3 6 10 3 0 0 0 0 0 48 19 ]
G [ 24 20 43 17 0 32 35 12 8 13 14 210 230 0 0 8 147 18 ]
T [ 147 149 120 11 68 46 56 52 85 55 108 0 0 7 0 4 22 124 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1200.1 MA1200 1 AGL25 Arabidopsis thaliana
MADS box factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: