Detailed information of matrix profile MA1440.1

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Profile summary
Name: fkh-9
Matrix ID: MA1440.1
Class: Fork head / winged helix factors
Family: Forkhead box (FOX) factors
Collection: CORE
Taxon: Nematodes
Species: Caenorhabditis briggsae
Data Type: PBM
Validation: 26963674
Uniprot ID: A8XJP7  
Source: 31133749
Comment: binding site: "TTGTTTCT". The last "C" is not supported in the motif, but one of the bound sequences has an A at that position, which is supported.

Sequence logo

Frequency matrix

         
A [ 274 31 171 0 0 250 174 0 ]
C [ 75 0 0 0 0 0 0 236 ]
G [ 75 0 780 0 15 93 16 236 ]
T [ 574 968 47 999 983 655 809 527 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1440.1 MA1440 1 fkh-9 Caenorhabditis briggsae
Forkhead box (FOX) factors Fork head / winged helix factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

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