J
20
JASPAR
2020
Toggle navigation
Cart
0
You have 0 profile(s) in cart.
Search profiles and add to cart
JASPAR Blog
Detailed information of matrix profile
MA1688.1
Home
Matrix > MA1688.1
Profile summary
Add
Name:
ARF16
Matrix ID:
MA1688.1
Class:
B3 domain
Family:
Collection:
CORE
Taxon:
Plants
Species:
Zea mays
Data Type:
DAP-seq
Validation:
24485461
Uniprot ID:
K7URZ7
Source:
30375394
Comment:
The motif matches the TGTC core motif associated to ARF TFs.
Sequence logo
Download SVG
Frequency matrix
JASPAR
TRANSFAC
MEME
RAW PFM
Reverse comp.
A [
1722
1874
797
519
477
200
211
101
407
192
653
580
1326
1754
]
C [
1781
1543
942
6061
338
214
283
359
6749
511
578
965
1614
2135
]
G [
1648
2087
697
565
261
220
6981
142
374
574
950
5307
1643
1473
]
T [
2681
2328
5396
687
6756
7198
357
7230
302
6555
5651
980
3249
2470
]
Binding sites information
HTML file
FASTA file
BED file
External links
Version information
ChIP-seq centrality
First order TFFM
Detailed TFFM
Wordclouds
More details
Matrix ID
Base ID
Version
Name
Species
Family
Class
Sequence logo
MA1688.1
MA1688
1
ARF16
Zea mays
B3 domain
JASPAR
TRANSFAC
MEME
RAW PFM
log(P-value) = -286.093
×
TFFM first order profile doesn't exist for this profile.
×
TFFM detailed profile doesn't exist for this profile.
Description:
Alias:
Symbol:
Consensus:
Included Models:
GC Content: