Detailed information of matrix profile MA1690.1

  1. Home
  2. Matrix > MA1690.1

Profile summary
Name: ARF25
Matrix ID: MA1690.1
Class: B3 domain
Family:
Collection: CORE
Taxon: Plants
Species: Zea mays
Data Type: DAP-seq
Validation: 24485461
Uniprot ID: C0PH36  
Source: 30375394
Comment: The motif matches the TGTC core motif associated to ARF TFs.

Sequence logo

Frequency matrix

         
A [ 7526 13488 9458 4788 1286 490 179 7031 602 18246 119 18584 9076 1349 1956 ]
C [ 7690 1748 2342 8051 638 134 121 261 171 140 19053 96 6075 2535 2345 ]
G [ 1231 1955 6525 3997 16922 18723 19073 11973 18527 1021 197 704 978 8454 8006 ]
T [ 2993 2249 1115 2604 594 93 67 175 140 33 71 56 3311 7102 7133 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1690.1 MA1690 1 ARF25 Zea mays
B3 domain
     

log(P-value) = -45332

TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: