Detailed information of matrix profile MA1696.1

  1. Home
  2. Matrix > MA1696.1

Profile summary
Name: ARF39
Matrix ID: MA1696.1
Class: B3 domain
Family:
Collection: CORE
Taxon: Plants
Species: Zea mays
Data Type: DAP-seq
Validation: 24485461
Uniprot ID:
Source: 30375394
Comment: The motif matches the TGTC core motif associated to ARF TFs.

Sequence logo

Frequency matrix

         
A [ 2253 314 851 37 22 34 54 108 12 26 399 882 ]
C [ 669 2258 697 69 62 172 1884 3612 3983 3496 2373 641 ]
G [ 517 1030 1832 106 3926 29 29 46 27 32 576 2006 ]
T [ 629 466 688 3856 58 3833 2101 302 46 514 720 539 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1696.1 MA1696 1 ARF39 Zea mays
B3 domain
     

log(P-value) = -10535.4

TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: