Detailed information of matrix profile UN0260.1

  1. Home
  2. Matrix > UN0260.1
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: Prdm9
Matrix ID: UN0260.1
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
Collection: UNVALIDATED
Taxon: Vertebrates
Species: Mus musculus
Data Type: ChIP-seq
Validation:
Uniprot ID: Q9NQV7  
Source: 30462313
Comment: not supported by literature

Sequence logo

Frequency matrix

         
A [ 4121 3050 1806 2208 778 8916 369 295 9254 1178 79 8537 570 296 3954 1854 ]
C [ 1222 1607 241 310 6722 44 115 2443 70 536 9649 278 5520 9295 1608 2213 ]
G [ 2741 1782 6857 6962 204 799 9283 133 498 7262 56 202 1798 123 719 2855 ]
T [ 1853 3498 1033 457 2233 178 170 7066 115 961 153 920 2049 223 3656 3015 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0260.1 UN0260 1 Prdm9 Mus musculus
Factors with multiple dispersed zinc fingers C2H2 zinc finger factors
     

log(P-value) = -7712.22

TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: