Detailed information of matrix profile MA0594.1

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Profile summary
Name: Hoxa9
Matrix ID: MA0594.1
Class: Homeo domain factors
Family: HOX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: ChIP-seq
Validation: 12923056
Uniprot ID: P09631  
Source: PAZAR
Comment:

Sequence logo

Frequency matrix

         
A [ 34 12 38 161 0 101 157 171 5 7 131 ]
C [ 53 110 117 3 0 58 6 1 0 154 11 ]
G [ 81 5 0 8 0 8 0 0 1 0 0 ]
T [ 4 45 17 0 172 5 9 0 166 11 30 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0594.1 MA0594 1 Hoxa9 Mus musculus
HOX-related factors Homeo domain factors
MA0594.2 MA0594 2 HOXA9 Homo sapiens
HOX-related factors Homeo domain factors
     

log(P-value) = -181.34

TFFM details

TFFM ID: TFFM0179.1

ChIP-seq Centrality
log(P-value): -800.715

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0179.1

ChIP-seq Centrality
log(P-value): -761.749

TFFM detailed summary logos

Description: homeobox A9

Alias: Hox-1.7,D6a9

Symbol: HOXA9

Consensus:

Included Models:

GC Content: