JASPAR RESTful API

This API provides an easy-to-use REST web interface to query/retrieve matrix profile data from the latest version of the JASPAR database. The API comes with a human browsable interface and also a programmatic interface which return the results in eight different formats, including json, jsonp, jaspar, meme, transfac, pfm, yaml and bed.

GET /api/v1/matrix/MA1188.1/

HTTP 200 OK
Allow: GET, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "source": "27203113",
    "pfm": {
        "A": [
            361.0,
            260.0,
            29.0,
            117.0,
            0.0,
            4.0,
            582.0,
            0.0,
            0.0,
            120.0,
            122.0,
            189.0,
            290.0,
            112.0
        ],
        "T": [
            115.0,
            278.0,
            193.0,
            41.0,
            565.0,
            485.0,
            0.0,
            573.0,
            0.0,
            296.0,
            345.0,
            147.0,
            249.0,
            285.0
        ],
        "G": [
            60.0,
            28.0,
            34.0,
            64.0,
            0.0,
            0.0,
            0.0,
            6.0,
            0.0,
            22.0,
            52.0,
            51.0,
            28.0,
            30.0
        ],
        "C": [
            46.0,
            16.0,
            326.0,
            360.0,
            17.0,
            93.0,
            0.0,
            3.0,
            582.0,
            144.0,
            63.0,
            195.0,
            15.0,
            155.0
        ]
    },
    "versions_url": "https://jaspar2020.genereg.net/api/v1/matrix/MA1188/versions",
    "name": "At3g11280",
    "matrix_id": "MA1188.1",
    "tfbs_shape_id": "1",
    "tffm": {
        "tffm_url": "https://jaspar2020.genereg.net/api/v1/tffm/TFFM0259.1/",
        "experiment_name": "GSE60143",
        "tffm_id": "TFFM0259.1",
        "version": 1,
        "base_id": "TFFM0259",
        "log_p_detailed": -1593.53,
        "log_p_1st_order": -1779.73
    },
    "type": "DAP-seq",
    "base_id": "MA1188",
    "class": [
        "Helix-Turn-Helix"
    ],
    "sequence_logo": "https://jaspar2020.genereg.net/static/logos/svg/MA1188.1.svg",
    "collection": "CORE",
    "version": 1,
    "tax_group": "plants",
    "medline": [
        "25215497"
    ],
    "tfe_ids": [],
    "family": [
        "Myb-related"
    ],
    "uniprot_ids": [],
    "species": [
        {
            "tax_id": 3702,
            "name": "Arabidopsis thaliana"
        }
    ],
    "pubmed_ids": [
        "25215497"
    ],
    "sites_url": null,
    "tfe_id": [],
    "pazar_tf_id": [],
    "pazar_tf_ids": []
}

Matrix Details